First report of knowledge discovery in predicting protein folding rate change upon single mutation

Lien Fu Lai, Chao Chin Wu, Liang Tsung Huang

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Abstract

To explore the mechanism of protein folding is one of the important topics in protein research. The accurate prediction of protein folding rate change is helpful and useful in protein design. In earlier study, we have firstly analyzed the prediction of folding rate change upon single point mutation and constructed a non-redundant dataset of F467. F467 consists of 467 mutants with various features and widely distributed on secondary structure, solvent accessibility, conservation score and long-range contacts. In this work, we therefore focused on effectively developing the knowledge in F467 dataset. We have systematically analyzed the dataset and presented several representative data mining techniques, including decision tree, decision table and association rule algorithms. Furthermore, we have interpreted, evaluated, and compared the knowledge obtained from different techniques. The experimental results showed that the present approach can effectively develop the knowledge in the dataset and the outcomes can increase the understanding of predicting protein folding rate change upon single mutation. We have also created a website with related information about this work and it is freely available at http://bioinformatics. myweb.hinet.net/kdfreedom.htm .

Original languageEnglish
Title of host publicationBio-Inspired Computing and Applications - 7th International Conference on Intelligent Computing, ICIC 2011, Revised Selected Papers
Pages624-631
Number of pages8
DOIs
Publication statusPublished - 2011 Dec 1
Event7th International Conference on Intelligent Computing, ICIC 2011 - Zhengzhou, China
Duration: 2011 Aug 112011 Aug 14

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume6840 LNBI
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Other

Other7th International Conference on Intelligent Computing, ICIC 2011
CountryChina
CityZhengzhou
Period11-08-1111-08-14

Fingerprint

Protein folding
Protein Folding
Knowledge Discovery
Data mining
Mutation
Proteins
Protein
Decision tables
Decision Table
Prediction
Association rules
Association Rules
Secondary Structure
Decision trees
Folding
Accessibility
Decision tree
Mutant
Conservation
Websites

All Science Journal Classification (ASJC) codes

  • Theoretical Computer Science
  • Computer Science(all)

Cite this

Lai, L. F., Wu, C. C., & Huang, L. T. (2011). First report of knowledge discovery in predicting protein folding rate change upon single mutation. In Bio-Inspired Computing and Applications - 7th International Conference on Intelligent Computing, ICIC 2011, Revised Selected Papers (pp. 624-631). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 6840 LNBI). https://doi.org/10.1007/978-3-642-24553-4_83
Lai, Lien Fu ; Wu, Chao Chin ; Huang, Liang Tsung. / First report of knowledge discovery in predicting protein folding rate change upon single mutation. Bio-Inspired Computing and Applications - 7th International Conference on Intelligent Computing, ICIC 2011, Revised Selected Papers. 2011. pp. 624-631 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
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Lai, LF, Wu, CC & Huang, LT 2011, First report of knowledge discovery in predicting protein folding rate change upon single mutation. in Bio-Inspired Computing and Applications - 7th International Conference on Intelligent Computing, ICIC 2011, Revised Selected Papers. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 6840 LNBI, pp. 624-631, 7th International Conference on Intelligent Computing, ICIC 2011, Zhengzhou, China, 11-08-11. https://doi.org/10.1007/978-3-642-24553-4_83

First report of knowledge discovery in predicting protein folding rate change upon single mutation. / Lai, Lien Fu; Wu, Chao Chin; Huang, Liang Tsung.

Bio-Inspired Computing and Applications - 7th International Conference on Intelligent Computing, ICIC 2011, Revised Selected Papers. 2011. p. 624-631 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 6840 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

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Lai LF, Wu CC, Huang LT. First report of knowledge discovery in predicting protein folding rate change upon single mutation. In Bio-Inspired Computing and Applications - 7th International Conference on Intelligent Computing, ICIC 2011, Revised Selected Papers. 2011. p. 624-631. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). https://doi.org/10.1007/978-3-642-24553-4_83